Added sm.tl.umap and sm.tl.spatial_similarity_search
0.19.0 (2022-04-03)
Included support for Apple M1 machines
Included support for native rendering of Zarr stored images using Napari: pl.image_viewer and pl.gate_finder
0.14.0 (2021-04-10)
Included sm.tl.foldchange function. Also calculated p-val by Fisher exact test
0.12.0 (2021-02-12)
Included sm.pl.voronoi function. Now possible to draw voronoi diagram of the images using X/Y coordinates
0.11.0 (2021-01-30)
Included spatial_pscore function
0.10.0 (2020-11-27)
Included stacked_barplot function to generate a stacked barplot from any two cloumns
0.9.0 (2020-11-21)
Updated pl.image_viewer and pl.gate_finder functions -
Implemeted Zarr functionality for napari viz.
0.8.7 (2020-11-18)
Updated pl.spatial_interaction function to include two additional parameters -
subset_phenotype and subset_neighbour_phenotype.
0.8.3 (2020-11-16)
Added hl.add_roi function. Used to incorporate ROI's extracted from Omero into the scimap object.
0.8.0 (2020-11-09)
Updated pp.mcmicro_to_scimap function. Added a new parameter unique_CellId
Added a helper function scimap_to_csv to save the andata object as a CSV.
Added documentation and tests for scimap_to_csv
0.7.10 (2020-10-30)
Updated pp.rescale function. If a gate is included in the manual_gate.csv
file but no gate value is provided, the algorithm simply scales the data between
0-1 without changing the undelying structure.
0.7.6 (2020-10-27)
Updated hl.spatial_distance to include option to convert to
log scale and also pass multiple distance_to parameter.