Skip to content

0.19.0 (2023-04-03)

  • Included support for Apple M1 machines
  • Included support for native rendering of Zarr stored images using Napari: pl.image_viewer and pl.gate_finder

0.14.0 (2021-04-10)

  • Included sm.tl.foldchange function. Also calculated p-val by Fisher exact test

0.12.0 (2021-02-12)

  • Included sm.pl.voronoi function. Now possible to draw voronoi diagram of the images using X/Y coordinates

0.11.0 (2021-01-30)

  • Included spatial_pscore function

0.10.0 (2020-11-27)

  • Included stacked_barplot function to generate a stacked barplot from any two cloumns

0.9.0 (2020-11-21)

  • Updated pl.image_viewer and pl.gate_finder functions - Implemeted Zarr functionality for napari viz.

0.8.7 (2020-11-18)

  • Updated pl.spatial_interaction function to include two additional parameters - subset_phenotype and subset_neighbour_phenotype.

0.8.3 (2020-11-16)

  • Added hl.add_roi function. Used to incorporate ROI's extracted from Omero into the scimap object.

0.8.0 (2020-11-09)

  • Updated pp.mcmicro_to_scimap function. Added a new parameter unique_CellId
  • Added a helper function scimap_to_csv to save the andata object as a CSV.
  • Added documentation and tests for scimap_to_csv

0.7.10 (2020-10-30)

  • Updated pp.rescale function. If a gate is included in the manual_gate.csv file but no gate value is provided, the algorithm simply scales the data between 0-1 without changing the undelying structure.

0.7.6 (2020-10-27)

  • Updated hl.spatial_distance to include option to convert to log scale and also pass multiple distance_to parameter.

0.7.5 (2020-10-27)

  • Updated hl.classify to improve speed

0.7.3 (2020-10-27)

  • Addition of binary view in pl.spatial_interaction

0.7.2 (2020-10-26)

  • Addition of hl.classify function.
  • Documentation for hl.classify function.
  • Readme file modification
Back to top