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- Included support for
Apple M1 machines
- Included support for native rendering of Zarr stored images using Napari:
sm.tl.foldchange function. Also calculated p-val by Fisher exact test
sm.pl.voronoi function. Now possible to draw voronoi diagram of the images using X/Y coordinates
stacked_barplot function to generate a stacked barplot from any two cloumns
pl.gate_finder functions -
Implemeted Zarr functionality for napari viz.
pl.spatial_interaction function to include two additional parameters -
hl.add_roi function. Used to incorporate ROI's extracted from Omero into the scimap object.
pp.mcmicro_to_scimap function. Added a new parameter
- Added a helper function
scimap_to_csv to save the andata object as a CSV.
- Added documentation and tests for
pp.rescale function. If a gate is included in the
file but no gate value is provided, the algorithm simply scales the data between
0-1 without changing the undelying structure.
hl.spatial_distance to include option to convert to
log scale and also pass multiple
hl.classify to improve speed
- Addition of binary view in
- Addition of
- Documentation for
- Readme file modification