spatial_pscore
Short Description
sm.pl.spatial_pscore
: The function allows users to plot proximity volume and density scores.
Run sm.tl.spatial_pscore
before running this function.
Function
spatial_pscore(adata, label='spatial_pscore', plot_score='both', order_xaxis=None, color='grey', **kwargs)
Parameters:
Name | Type | Description | Default |
---|---|---|---|
adata |
AnnData object |
required | |
label |
string, optional |
'spatial_pscore'
|
|
plot_score |
string, optional |
'both'
|
|
order_xaxis |
list, optional |
None
|
|
color |
string, optional |
'grey'
|
|
**kwargs |
string |
{}
|
1 2 3 |
|
Source code in scimap/plotting/_spatial_pscore.py
19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 |
|